1 files changed, 0 insertions, 124 deletions
diff --git a/backend/tolData/genLinkedImgs.py b/backend/tolData/genLinkedImgs.py
deleted file mode 100755
index 6d2feff..0000000
--- a/backend/tolData/genLinkedImgs.py
+++ /dev/null
@@ -1,124 +0,0 @@
-#!/usr/bin/python3
-
-import re
-import sqlite3
-
-import argparse
-parser = argparse.ArgumentParser(description="""
-Look for nodes without images in the database, and tries to
-associate them with images from their children
-""", formatter_class=argparse.RawDescriptionHelpFormatter)
-parser.parse_args()
-
-dbFile = 'data.db'
-compoundNameRegex = re.compile(r'\[(.+) \+ (.+)]')
-upPropagateCompoundImgs = False
-
-print('Opening databases')
-dbCon = sqlite3.connect(dbFile)
-dbCur = dbCon.cursor()
-dbCur.execute('CREATE TABLE linked_imgs (name TEXT PRIMARY KEY, otol_ids TEXT)')
-
-print('Getting nodes with images')
-resolvedNodes: dict[str, str] = {} # Will map node names to otol IDs with a usable image
-query = 'SELECT nodes.name, nodes.id FROM nodes INNER JOIN node_imgs ON nodes.name = node_imgs.name'
-for name, otolId in dbCur.execute(query):
-	resolvedNodes[name] = otolId
-print(f'Found {len(resolvedNodes)}')
-
-print('Iterating through nodes, trying to resolve images for ancestors')
-nodesToResolve: dict[str, list[dict[str, str | int | None]]] = {}
-	# Maps a node name to a list of objects that represent possible child images
-processedNodes: dict[str, str] = {} # Map a node name to an OTOL ID, representing a child node whose image is to be used
-parentToChosenTips: dict[str, int] = {} # Used to prefer images from children with more tips
-iterNum = 0
-while resolvedNodes:
-	iterNum += 1
-	if iterNum % 1e3 == 0:
-		print(f'At iteration {iterNum}')
-	# Get next node
-	nodeName, otolId = resolvedNodes.popitem()
-	processedNodes[nodeName] = otolId
-	# Traverse upwards, resolving ancestors if able
-	while True:
-		# Get parent
-		row = dbCur.execute('SELECT parent FROM edges WHERE child = ?', (nodeName,)).fetchone()
-		if row is None or row[0] in processedNodes or row[0] in resolvedNodes:
-			break
-		parent: str = row[0]
-		# Get parent data
-		if parent not in nodesToResolve:
-			childNames: list[str] = [
-				row[0] for row in dbCur.execute('SELECT child FROM edges WHERE parent = ?', (parent,))]
-			query = 'SELECT name, tips FROM nodes WHERE name IN ({})'.format(','.join(['?'] * len(childNames)))
-			childObjs = [{'name': row[0], 'tips': row[1], 'otolId': None} for row in dbCur.execute(query, childNames)]
-			childObjs.sort(key=lambda x: x['tips'], reverse=True)
-			nodesToResolve[parent] = childObjs
-		else:
-			childObjs = nodesToResolve[parent]
-		# Check if highest-tips child
-		if childObjs[0]['name'] == nodeName:
-			# Resolve parent, and continue from it
-			dbCur.execute('INSERT INTO linked_imgs VALUES (?, ?)', (parent, otolId))
-			del nodesToResolve[parent]
-			processedNodes[parent] = otolId
-			parentToChosenTips[parent] = childObjs[0]['tips']
-			nodeName = parent
-			continue
-		else:
-			# Mark child as a potential choice
-			childObj = next(c for c in childObjs if c['name'] == nodeName)
-			childObj['otolId'] = otolId
-			break
-	# When out of resolved nodes, resolve nodesToResolve nodes, possibly adding more nodes to resolve
-	if not resolvedNodes:
-		for name, childObjs in nodesToResolve.items():
-			childObj = next(c for c in childObjs if c['otolId'] is not None)
-			resolvedNodes[name] = childObj['otolId']
-			parentToChosenTips[name] = childObj['tips']
-			dbCur.execute('INSERT INTO linked_imgs VALUES (?, ?)', (name, childObj['otolId']))
-		nodesToResolve.clear()
-
-print('Replacing linked-images for compound nodes')
-iterNum = 0
-for nodeName in processedNodes.keys():
-	iterNum += 1
-	if iterNum % 1e4 == 0:
-		print(f'At iteration {iterNum}')
-	#
-	match = compoundNameRegex.fullmatch(nodeName)
-	if match is not None:
-		# Replace associated image with subname images
-		subName1, subName2 = match.group(1,2)
-		otolIdPair = ['', '']
-		if subName1 in processedNodes:
-			otolIdPair[0] = processedNodes[subName1]
-		if subName2 in processedNodes:
-			otolIdPair[1] = processedNodes[subName2]
-		# Use no image if both subimages not found
-		if otolIdPair[0] == '' and otolIdPair[1] == '':
-			dbCur.execute('DELETE FROM linked_imgs WHERE name = ?', (nodeName,))
-			continue
-		# Add to db
-		dbCur.execute('UPDATE linked_imgs SET otol_ids = ? WHERE name = ?',
-			(otolIdPair[0] + ',' + otolIdPair[1], nodeName))
-		# Possibly repeat operation upon parent/ancestors
-		if upPropagateCompoundImgs:
-			while True:
-				# Get parent
-				row = dbCur.execute('SELECT parent FROM edges WHERE child = ?', (nodeName,)).fetchone()
-				if row is not None:
-					parent = row[0]
-					# Check num tips
-					(numTips,) = dbCur.execute('SELECT tips from nodes WHERE name = ?', (nodeName,)).fetchone()
-					if parent in parentToChosenTips and parentToChosenTips[parent] <= numTips:
-						# Replace associated image
-						dbCur.execute('UPDATE linked_imgs SET otol_ids = ? WHERE name = ?',
-							(otolIdPair[0] + ',' + otolIdPair[1], parent))
-						nodeName = parent
-						continue
-				break
-
-print('Closing databases')
-dbCon.commit()
-dbCon.close()