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@@ -3,7 +3,7 @@ This directory holds files used to generate the tree-of-life database data.db.
# Database Tables
## Tree Structure
- `nodes` <br>
- Format : `name TEXT PRIMARY KEY, id TEXT UNIQUE, tips INT` <br>
+ Format: `name TEXT PRIMARY KEY, id TEXT UNIQUE, tips INT` <br>
Represents a tree-of-life node. `tips` holds the number of no-child descendants
- `edges` <br>
Format: `parent TEXT, child TEXT, p_support INT, PRIMARY KEY (parent, child)` <br>
@@ -59,10 +59,8 @@ takes several days, and occupies over 200 GB.
## Environment
Some of the scripts use third-party packages:
- `indexed_bzip2`: For parallelised bzip2 processing.
-- `jsonpickle`: For encoding class objects as JSON.
- `requests`: For downloading data.
-- `PIL`: For image processing.
-- `tkinter`: For providing a basic GUI to review images.
+- `Pillow`: For image processing.
- `mwxml`, `mwparserfromhell`: For parsing Wikipedia dumps.
## Generate Tree Structure Data