diff options
Diffstat (limited to 'backend/tol_data/otol/README.md')
| -rw-r--r-- | backend/tol_data/otol/README.md | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/backend/tol_data/otol/README.md b/backend/tol_data/otol/README.md new file mode 100644 index 0000000..e018369 --- /dev/null +++ b/backend/tol_data/otol/README.md @@ -0,0 +1,19 @@ +This directory holds files obtained via the +[Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life). + +# Tree Data Files +- `opentree13.4tree.tgz` <br> + Obtained from <https://tree.opentreeoflife.org/about/synthesis-release/v13.4>. + Contains tree data from the [Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life). +- `labelled_supertree_ottnames.tre` <br> + Extracted from the .tgz file. Describes the structure of the tree. +- `annotations.json` <br> + Extracted from the .tgz file. Contains additional attributes of tree + nodes. Used for finding out which nodes have 'phylogenetic support'. + +# Taxonomy Data Files +- `ott3.3.tgz` <br> + Obtained from <https://tree.opentreeoflife.org/about/taxonomy-version/ott3.3>. + Contains taxonomy data from the Open Tree of Life. +- `otol/taxonomy.tsv` <br> + Extracted from the .tgz file. Holds taxon IDs from sources like NCBI, used to map between datasets. |