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-rw-r--r--src/tol.json318
-rw-r--r--src/tol.txt161
2 files changed, 153 insertions, 326 deletions
diff --git a/src/tol.json b/src/tol.json
deleted file mode 100644
index a618f4a..0000000
--- a/src/tol.json
+++ /dev/null
@@ -1,318 +0,0 @@
-{"name": "Root", "children": [
- {"name": "Viruses", "children": [
- {"name": "Coronaviridae"},
- {"name": "Enterovirus"},
- {"name": "Rabies lyssavirus"}
- ]},
- {"name": "Archaea"},
- {"name": "Bacteria", "children": [
- {"name": "Cyanobacteria"},
- {"name": "Proteobacteria"}
- ]},
- {"name": "Eukaryota", "children": [
- {"name": "Amoebozoa"},
- {"name": "Plantae", "children": [
- {"name": "Rhodopyhta"},
- {"name": "Viridiplantae", "children": [
- {"name": "Prasinophytes"},
- {"name": "Ulvophyceae"},
- {"name": "Streptophyta", "children": [
- {"name": "Charales"},
- {"name": "Embryophytes", "children": [
- {"name": "Marchantiomorpha"},
- {"name": "Anthocerotophyta"},
- {"name": "Bryophyta"},
- {"name": "Lycopodiopsida", "children": [
- {"name": "Lycopodiidae"},
- {"name": "Selaginellales"}
- ]},
- {"name": "Polypodiopsida", "children": [
- {"name": "Polypodiidae", "children": [
- {"name": "Polypodiales"}
- ]},
- {"name": "Equisetidae"}
- ]},
- {"name": "Spermatopsida", "children": [
- {"name": "Cycads"},
- {"name": "Conifers", "children": [
- {"name": "Taxaceae"},
- {"name": "Cupressaceae"},
- {"name": "Pinaceae", "children": [
- {"name": "Pinus"},
- {"name": "Picea"},
- {"name": "Larix"},
- {"name": "Cedrus"},
- {"name": "Abies"}
- ]}
- ]},
- {"name": "Ginkgos"},
- {"name": "Angiosperms", "children": [
- {"name": "Illicium"},
- {"name": "magnoliids", "children": [
- {"name": "Piperales", "children": [
- {"name": "Piperaceae"}
- ]},
- {"name": "Magnoliales", "children": [
- {"name": "Annonaceae"},
- {"name": "Myristicaceae"}
- ]},
- {"name": "Laurales", "children": [
- {"name": "Lauraceae"}
- ]}
- ]},
- {"name": "Monocotyledons", "children": [
- {"name": "Alismatanae"},
- {"name": "Aranae"},
- {"name": "Liliaceae"},
- {"name": "Asparagales", "children": [
- {"name": "Amaryllidaceae"},
- {"name": "Asparagaceae"},
- {"name": "Asphodelaceae"},
- {"name": "Iridaceae"},
- {"name": "Orchidaceae"}
- ]},
- {"name": "Dioscoreaceae"},
- {"name": "Arecanae", "children": [
- {"name": "Cocoeae"},
- {"name": "Phoeniceae"}
- ]},
- {"name": "Zingiberanae", "children": [
- {"name": "Musaceae"},
- {"name": "Strelitziaceae"},
- {"name": "Zingiberaceae"}
- ]},
- {"name": "Commelinanae", "children": [
- {"name": "Bromeliaceae"},
- {"name": "Cyperaceae"},
- {"name": "Typhaceae"},
- {"name": "Poaceae"}
- ]}
- ]},
- {"name": "eudicots", "children": [
- {"name": "Ranunculales", "children": [
- {"name": "Papaveraceae"},
- {"name": "Ranunculaceae"}
- ]},
- {"name": "Proteales", "children": [
- {"name": "Proteaceae"},
- {"name": "Nelumbo"}
- ]},
- {"name": "Core Eudicots", "children": [
- {"name": "Saxifragales"},
- {"name": "Rosids", "children": [
- {"name": "Fabaceae", "children": [
- {"name": "Mimosoideae"},
- {"name": "IRLC (Inverted Repat-lacking clade)", "children": [
- {"name": "Trifolieae"},
- {"name": "Fabeae"}
- ]}
- ]},
- {"name": "Rosales", "children": [
- {"name": "Rosaceae"},
- {"name": "Ulmaceae"},
- {"name": "Urticaceae"},
- {"name": "Moraceae"},
- {"name": "Cannabaceae"}
- ]},
- {"name": "Fagales", "children": [
- {"name": "Fagaceae"},
- {"name": "Betulaceae"},
- {"name": "Juglandaceae"}
- ]},
- {"name": "Cucurbitales", "children": [
- {"name": "Cucurbitaceae"}
- ]},
- {"name": "Malpighiales", "children": [
- {"name": "Salicaceae"},
- {"name": "Violaceae"},
- {"name": "Passifloraceae"},
- {"name": "Erythroxylaceae"},
- {"name": "Rhizophoraceae"},
- {"name": "Euphorbiaceae"},
- {"name": "Linaceae"},
- {"name": "Rafflesiaceae"}
- ]},
- {"name": "Myrtales", "children": [
- {"name": "Myrtaceae"},
- {"name": "Onagraceae"},
- {"name": "Lythraceae"}
- ]},
- {"name": "Brassicales", "children": [
- {"name": "Caricaceae"},
- {"name": "Brassicaceae"}
- ]},
- {"name": "Malvales", "children": [
- {"name": "Core Malvales", "children": [
- {"name": "Malvoideae"},
- {"name": "Bombacoideae"},
- {"name": "Sterculioideae"},
- {"name": "Helicteroideae"},
- {"name": "Byttnerioideae"}
- ]}
- ]},
- {"name": "Sapindales", "children": [
- {"name": "Anacardiaceae"},
- {"name": "Burseraceae"},
- {"name": "Meliaceae"},
- {"name": "Rutaceae"},
- {"name": "Sapindaceae"}
- ]}
- ]},
- {"name": "Vitaceae"},
- {"name": "Caryophyllales", "children": [
- {"name": "Polygonaceae"},
- {"name": "Droseraceae"},
- {"name": "Nepenthaceae"},
- {"name": "core Caryophyllales", "children": [
- {"name": "Cactaceae"},
- {"name": "Amaranthaceae"}
- ]}
- ]},
- {"name": "Asterids", "children": [
- {"name": "Ericales", "children": [
- {"name": "Actinidiaceae"},
- {"name": "Ericaceae"},
- {"name": "Lecythidaceae"},
- {"name": "Sapotaceae"},
- {"name": "Ebenaceae"},
- {"name": "Theaceae"}
- ]},
- {"name": "Solanales", "children": [
- {"name": "Solanaceae"},
- {"name": "Convolvulaceae"}
- ]},
- {"name": "Lamiales", "children": [
- {"name": "Oleaceae", "children": [
- {"name": "Fraxinus"}
- ]},
- {"name": "Bignoniaceae"},
- {"name": "Pedaliaceae"},
- {"name": "Lentibulariaceae"},
- {"name": "Lamiaceae"}
- ]},
- {"name": "Gentianales", "children": [
- {"name": "Rubiaceae"}
- ]},
- {"name": "Asterales", "children": [
- {"name": "Campanulaceae"},
- {"name": "Asteraceae", "children": [
- {"name": "Carduoideae", "children": [
- {"name": "Cardueae"}
- ]},
- {"name": "Cichorioideae", "children": [
- {"name": "Cichorieae"}
- ]},
- {"name": "Asteroideae", "children": [
- {"name": "Asterodae"},
- {"name": "Helianthodae"}
- ]}
- ]}
- ]},
- {"name": "Apiales", "children": [
- {"name": "Apiaceae"},
- {"name": "Araliaceae"}
- ]},
- {"name": "Aquifoliaceae"}
- ]}
- ]}
- ]}
- ]}
- ]}
- ]}
- ]}
- ]}
- ]},
- {"name": "Fungi", "children": [
- {"name": "Fungi 1", "children": [
- {"name": "Dikarya", "children": [
- {"name": "Basidiomycota", "children": [
- {"name": "Agaricomycotina", "children": [
- {"name": "Agaricomycetes", "children": [
- {"name": "Agaricomycetes 1", "children": [
- {"name": "Agaricomycetidae", "children": [
- {"name": "Agaricales", "children": [
- {"name": "Strophariaceae strict-sense"},
- {"name": "Psathyrellaceae"},
- {"name": "Agaricaceae"},
- {"name": "Nidulariaceae"},
- {"name": "Marasmiaceae"},
- {"name": "Physalacriaceae"},
- {"name": "Pleurotaceae"},
- {"name": "Amanitaceae"},
- {"name": "Podoserpula"}
- ]},
- {"name": "Boletales", "children": [
- {"name": "Serpulaceae"},
- {"name": "Sclerodermataceae"},
- {"name": "Boletaceae"}
- ]}
- ]},
- {"name": "Russulales"},
- {"name": "Hymenochaetales"}
- ]},
- {"name": "Phallomycetidae", "children": [
- {"name": "Geastrales"},
- {"name": "Gomphales"},
- {"name": "Phallales"}
- ]},
- {"name": "Cantharellales"},
- {"name": "Auriculariales"}
- ]},
- {"name": "Tremellomycetes"}
- ]},
- {"name": "Ustilaginomycotina"},
- {"name": "Pucciniomycotina", "children": [
- {"name": "Pucciniomycetes", "children": [
- {"name": "Septobasidiales"},
- {"name": "Pucciniales"}
- ]},
- {"name": "Mixiomycetes"},
- {"name": "Tritirachiomycetes"}
- ]},
- {"name": "Entorrhizomycetes"},
- {"name": "Wallemiomycetes"}
- ]},
- {"name": "Ascomycota", "children": [
- {"name": "Pezizomycotina", "children": [
- {"name": "Pezizomycetes"},
- {"name": "'Leotiomyceta'", "children": [
- {"name": "Eurotiomycetes"},
- {"name": "Geoglossaceae"},
- {"name": "Sordariomycetes", "children": [
- {"name": "Hypocreomycetidae"},
- {"name": "Sordariomycetidae"}
- ]},
- {"name": "Laboulbeniomycetes"},
- {"name": "Pleosporomycetidae"}
- ]}
- ]},
- {"name": "Saccharomycotina"},
- {"name": "Taphrinomycotina", "children": [
- {"name": "Schizosaccharomycetes"},
- {"name": "Pneumocystidiomycetes"},
- {"name": "Taphrinomycetes"}
- ]}
- ]}
- ]},
- {"name": "Glomeromycota"}
- ]},
- {"name": "Zygomycota", "children": [
- {"name": "Endogonales"},
- {"name": "Mucorales"}
- ]},
- {"name": "Blastocladiomycota"},
- {"name": "Chytridiomycota"},
- {"name": "Neocallimastigomycota"},
- {"name": "Microsporidia"}
- ]},
- {"name": "Metazoa", "children": [
- {"name": "Cnidaria"},
- {"name": "Arthropoda"},
- {"name": "Vertebrata", "children": [
- {"name": "Amphibia"},
- {"name": "Reptilia"},
- {"name": "Synapsida"}
- ]}
- ]}
- ]}
-]}
diff --git a/src/tol.txt b/src/tol.txt
index a881d55..048e172 100644
--- a/src/tol.txt
+++ b/src/tol.txt
@@ -1,13 +1,47 @@
Root
Viruses
- Coronaviridae
- Enterovirus
- Rabies lyssavirus
+ Caudovirales
+ Herpesvirales
+ Ligamenvirales
+ Mononegavirales
+ Nidovirales
+ Picornavirales
+ Tymovirales
Archaea
+ Crenarchaeota
+ Euryarchaeota
Bacteria
+ Acidobacteria
+ Actinobacteria
+ Aquificae
+ Armatimonadetes
+ Bacteroidetes
+ Caldiserica
+ Chlamydiae
+ Chlorobi
+ Chloroflexi
+ Chrysiogenetes
Cyanobacteria
+ Deferribacteres
+ Deinococcus-thermus
+ Dictyoglomi
+ Elusimicrobia
+ Fibrobacteres
+ Firmicutes
+ Fusobacteria
+ Gemmatimonadetes
+ Lentisphaerae
+ Nitrospira
+ Planctomycetes
Proteobacteria
+ Spirochaetae
+ Synergistetes
+ Tenericutes
+ Thermodesulfobacteria
+ Thermotogae
+ Verrucomicrobia
Eukaryota
+ Diatoms
Amoebozoa
Plantae
Rhodopyhta
@@ -72,6 +106,9 @@ Root
Cyperaceae
Typhaceae
Poaceae
+ Zea mays
+ Triticum
+ Bambusoideae
eudicots
Ranunculales
Papaveraceae
@@ -89,6 +126,8 @@ Root
Fabeae
Rosales
Rosaceae
+ Rosa
+ Malus pumila
Ulmaceae
Urticaceae
Moraceae
@@ -234,10 +273,116 @@ Root
Chytridiomycota
Neocallimastigomycota
Microsporidia
- Metazoa
+ Animalia
+ Porifera
Cnidaria
+ Tardigrada
+ Annelida
+ Mollusca
+ Bivalvia
+ Gastropoda
+ Cephalopoda
Arthropoda
- Vertebrata
- Amphibia
- Reptilia
- Synapsida
+ Arachnida
+ Araneae
+ Opiliones
+ Scorpiones
+ Heterostigmata
+ Crustacea
+ Euphausiacea
+ Brachyura
+ Isopoda
+ Cirripedia
+ Insecta
+ Anisoptera
+ Mantodea
+ Cicadoidea
+ Siphonaptera
+ Cucujoidea
+ Phengodidae
+ Drosophilidae
+ Culicidae
+ Lepidoptera
+ Apini
+ Formicidae
+ Deuterostomia
+ Echinodermata
+ Crinoidea
+ Asteroidea
+ Echinoidea
+ Holothuroidea
+ Vertebrata
+ Chondrichthyes
+ Carcharodon carcharias
+ Rhinocodon typus
+ Batoidea
+ Pristidae
+ Actinopterygii
+ Clupeomorpha
+ Xiphias gladius
+ Siluriformes
+ Carassius auratus
+ Tetraodontidae
+ Molidae
+ Gymnotiformes
+ Lophiiformes
+ Exocoetidae
+ 'mudskipper'
+ Hippocampus
+ Psudoliparis swirei
+ Sarcopterygii
+ Tetrapoda
+ Amphibia
+ Gymnophiona
+ Caudata
+ Salamandra
+ Cryptobranchidae
+ Ambystomatidae
+ Anura
+ Reptilia
+ Testudines
+ Plesiosauria
+ Chamaeleonidae
+ Serpentes
+ Crocodilia
+ Dinosauria
+ Triceratops
+ Sauropoda
+ Tyrannosauroidea
+ Aves
+ magpie
+ parrot
+ eagle
+ owl
+ swan
+ chicken
+ penguin
+ hummingbird
+ Synapsida
+ monotreme
+ marsupial
+ kangaroo
+ possum
+ wombat
+ rodent
+ mouse
+ beaver
+ rabbit
+ feline
+ canine
+ bear
+ walrus
+ Artiodactyla
+ pig
+ camel
+ deer
+ giraffe
+ horse
+ elephant
+ cetacean
+ armadillo
+ bat
+ monkey
+ gorilla
+ chimpanzee
+ homo sapien
generated by cgit v1.2.3 (git 2.39.1) at 2026-04-25 15:52:42 +0000