From 5de5fb93e50fe9006221b30ac4a66f1be0db82e7 Mon Sep 17 00:00:00 2001 From: Terry Truong Date: Sun, 11 Sep 2022 14:55:42 +1000 Subject: Add backend unit tests - Add unit testing code in backend/tests/ - Change to snake-case for script/file/directory names - Use os.path.join() instead of '/' - Refactor script code into function defs and a main-guard - Make global vars all-caps Some fixes: - For getting descriptions, some wiki redirects weren't properly resolved - Linked images were sub-optimally propagated - Generation of reduced trees assumed a wiki-id association implied a description - Tilo.py had potential null dereferences by not always using a reduced node set - EOL image downloading didn't properly wait for all threads to end when finishing --- backend/tolData/otol/README.md | 19 ------------------- 1 file changed, 19 deletions(-) delete mode 100644 backend/tolData/otol/README.md (limited to 'backend/tolData/otol/README.md') diff --git a/backend/tolData/otol/README.md b/backend/tolData/otol/README.md deleted file mode 100644 index e018369..0000000 --- a/backend/tolData/otol/README.md +++ /dev/null @@ -1,19 +0,0 @@ -This directory holds files obtained via the -[Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life). - -# Tree Data Files -- `opentree13.4tree.tgz`
- Obtained from . - Contains tree data from the [Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life). -- `labelled_supertree_ottnames.tre`
- Extracted from the .tgz file. Describes the structure of the tree. -- `annotations.json`
- Extracted from the .tgz file. Contains additional attributes of tree - nodes. Used for finding out which nodes have 'phylogenetic support'. - -# Taxonomy Data Files -- `ott3.3.tgz`
- Obtained from . - Contains taxonomy data from the Open Tree of Life. -- `otol/taxonomy.tsv`
- Extracted from the .tgz file. Holds taxon IDs from sources like NCBI, used to map between datasets. -- cgit v1.2.3