From e8e58a3bb9dc233dacf573973457c5b48d369503 Mon Sep 17 00:00:00 2001
From: Terry Truong <terry06890@gmail.com>
Date: Tue, 30 Aug 2022 12:27:42 +1000
Subject: Add scripts for generating eol/enwiki mappings

- New data sources: OTOL taxonomy, EOL provider-ids, Wikidata dump
- Add 'node_iucn' table
- Remove 'redirected' field from 'wiki_ids' table
- Make 'eol_ids' table have 'name' as the primary key
- Combine name-generation scripts into genNameData.py
- Combine description-generation scripts into genDescData.py
---
 backend/tolData/otol/README.md | 19 ++++++++++++++-----
 1 file changed, 14 insertions(+), 5 deletions(-)

(limited to 'backend/tolData/otol/README.md')

diff --git a/backend/tolData/otol/README.md b/backend/tolData/otol/README.md
index 4be2fd2..e018369 100644
--- a/backend/tolData/otol/README.md
+++ b/backend/tolData/otol/README.md
@@ -1,10 +1,19 @@
-Files
-=====
--   opentree13.4tree.tgz <br>
+This directory holds files obtained via the
+[Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life).
+
+# Tree Data Files
+-   `opentree13.4tree.tgz` <br>
     Obtained from <https://tree.opentreeoflife.org/about/synthesis-release/v13.4>.
     Contains tree data from the [Open Tree of Life](https://tree.opentreeoflife.org/about/open-tree-of-life).
--   labelled\_supertree\_ottnames.tre <br>
+-   `labelled_supertree_ottnames.tre` <br>
     Extracted from the .tgz file. Describes the structure of the tree.
--   annotations.json
+-   `annotations.json` <br>
     Extracted from the .tgz file. Contains additional attributes of tree
     nodes. Used for finding out which nodes have 'phylogenetic support'.
+
+# Taxonomy Data Files
+-   `ott3.3.tgz` <br>
+    Obtained from <https://tree.opentreeoflife.org/about/taxonomy-version/ott3.3>.
+    Contains taxonomy data from the Open Tree of Life.
+-   `otol/taxonomy.tsv` <br>
+    Extracted from the .tgz file. Holds taxon IDs from sources like NCBI, used to map between datasets.
-- 
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