From 2ab48497797441164e7f57fca2660097d93398ca Mon Sep 17 00:00:00 2001
From: Terry Truong <terry06890@gmail.com>
Date: Mon, 25 Apr 2022 01:33:08 +1000
Subject: Adapt to handle open-tree-of-life data

Added data_otol/ with script that converts data from 'Open Tree of Life' release 13.4 into a JSON form.
Moved old tree-of-life data and images into data_tol_old/.
Added TolMap type to tol.ts, changed TolNode, and adapted other code to handle it.
Temporarily disabling tile images until image data is added.
---
 data_tol_old/tolData.txt | 388 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 388 insertions(+)
 create mode 100644 data_tol_old/tolData.txt

(limited to 'data_tol_old/tolData.txt')

diff --git a/data_tol_old/tolData.txt b/data_tol_old/tolData.txt
new file mode 100644
index 0000000..f73a064
--- /dev/null
+++ b/data_tol_old/tolData.txt
@@ -0,0 +1,388 @@
+Tree of Life
+	Viruses
+		Caudovirales
+		Herpesvirales
+		Ligamenvirales
+		Mononegavirales
+		Nidovirales
+		Picornavirales
+		Tymovirales
+	Archaea
+		Crenarchaeota
+		Euryarchaeota
+	Bacteria
+		Acidobacteria
+		Actinobacteria
+		Aquificae
+		Armatimonadetes
+		Bacteroidetes
+		Caldiserica
+		Chlamydiae
+		Chlorobi
+		Chloroflexi
+		Chrysiogenetes
+		Cyanobacteria
+		Deferribacteres
+		Deinococcus-thermus
+		Dictyoglomi
+		Elusimicrobia
+		Fibrobacteres
+		Firmicutes
+		Fusobacteria
+		Gemmatimonadetes
+		Lentisphaerae
+		Nitrospira
+		Planctomycetes
+		Proteobacteria
+		Spirochaetae
+		Synergistetes
+		Tenericutes
+		Thermodesulfobacteria
+		Thermotogae
+		Verrucomicrobia
+	Eukaryota
+		Diatoms
+		Amoebozoa
+		Plantae
+			Rhodopyhta
+			Viridiplantae
+				Prasinophytes
+				Ulvophyceae
+				Streptophyta
+					Charales
+					Embryophytes
+						Marchantiomorpha
+						Anthocerotophyta
+						Bryophyta
+						Lycopodiopsida
+							Lycopodiidae
+							Selaginellales
+						Polypodiopsida
+							Polypodiidae
+								Polypodiales
+							Equisetidae
+						Spermatopsida
+							Cycads
+							Conifers
+								Taxaceae
+								Cupressaceae
+								Pinaceae
+									Pinus
+									Picea
+									Larix
+									Cedrus
+									Abies
+							Ginkgos
+							Angiosperms
+								Illicium
+								magnoliids
+									Piperales
+										Piperaceae
+									Magnoliales
+										Annonaceae
+										Myristicaceae
+									Laurales
+										Lauraceae
+								Monocotyledons
+									Alismatanae
+									Aranae
+									Liliaceae
+									Asparagales
+										Amaryllidaceae
+										Asparagaceae
+										Asphodelaceae
+										Iridaceae
+										Orchidaceae
+									Dioscoreaceae
+									Arecanae
+										Cocoeae
+										Phoeniceae
+									Zingiberanae
+										Musaceae
+										Strelitziaceae
+										Zingiberaceae
+									Commelinanae
+										Bromeliaceae
+										Cyperaceae
+										Typhaceae
+										Poaceae
+											Zea mays
+											Triticum
+											Bambusoideae
+								eudicots
+									Ranunculales
+										Papaveraceae
+										Ranunculaceae
+									Proteales
+										Proteaceae
+										Nelumbo
+									Core Eudicots
+										Saxifragales
+										Rosids
+											Fabaceae
+												Mimosoideae
+												IRLC (Inverted Repat-lacking clade)
+													Trifolieae
+													Fabeae
+											Rosales
+												Rosaceae
+													Rosa
+													Malus pumila
+												Ulmaceae
+												Urticaceae
+												Moraceae
+												Cannabaceae
+											Fagales
+												Fagaceae
+												Betulaceae
+												Juglandaceae
+											Cucurbitales
+												Cucurbitaceae
+											Malpighiales
+												Salicaceae
+												Violaceae
+												Passifloraceae
+												Erythroxylaceae
+												Rhizophoraceae
+												Euphorbiaceae
+												Linaceae
+												Rafflesiaceae
+											Myrtales
+												Myrtaceae
+												Onagraceae
+												Lythraceae
+											Brassicales
+												Caricaceae
+												Brassicaceae
+											Malvales
+												Core Malvales
+													Malvoideae
+													Bombacoideae
+													Sterculioideae
+													Helicteroideae
+													Byttnerioideae
+											Sapindales
+												Anacardiaceae
+												Burseraceae
+												Meliaceae
+												Rutaceae
+												Sapindaceae
+										Vitaceae
+										Caryophyllales
+											Polygonaceae
+											Droseraceae
+											Nepenthaceae
+											core Caryophyllales
+												Cactaceae
+												Amaranthaceae
+										Asterids
+											Ericales
+												Actinidiaceae
+												Ericaceae
+												Lecythidaceae
+												Sapotaceae
+												Ebenaceae
+												Theaceae
+											Solanales
+												Solanaceae
+												Convolvulaceae
+											Lamiales
+												Oleaceae
+													Fraxinus
+												Bignoniaceae
+												Pedaliaceae
+												Lentibulariaceae
+												Lamiaceae
+											Gentianales
+												Rubiaceae
+											Asterales
+												Campanulaceae
+												Asteraceae
+													Carduoideae
+														Cardueae
+													Cichorioideae
+														Cichorieae
+													Asteroideae
+														Asterodae
+														Helianthodae
+											Apiales
+												Apiaceae
+												Araliaceae
+											Aquifoliaceae
+		Fungi
+			Fungi 1
+				Dikarya
+					Basidiomycota
+						Agaricomycotina
+							Agaricomycetes
+								Agaricomycetes 1
+									Agaricomycetidae
+										Agaricales
+											Strophariaceae strict-sense
+											Psathyrellaceae
+											Agaricaceae
+											Nidulariaceae
+											Marasmiaceae
+											Physalacriaceae
+											Pleurotaceae
+											Amanitaceae
+											Podoserpula
+										Boletales
+											Serpulaceae
+											Sclerodermataceae
+											Boletaceae
+									Russulales
+									Hymenochaetales
+								Phallomycetidae
+									Geastrales
+									Gomphales
+									Phallales
+								Cantharellales
+								Auriculariales
+							Tremellomycetes
+						Ustilaginomycotina
+						Pucciniomycotina
+							Pucciniomycetes
+								Septobasidiales
+								Pucciniales
+							Mixiomycetes
+							Tritirachiomycetes
+						Entorrhizomycetes
+						Wallemiomycetes
+					Ascomycota
+						Pezizomycotina
+							Pezizomycetes
+							'Leotiomyceta'
+								Eurotiomycetes
+								Geoglossaceae
+								Sordariomycetes
+									Hypocreomycetidae
+									Sordariomycetidae
+								Laboulbeniomycetes
+								Pleosporomycetidae
+						Saccharomycotina
+						Taphrinomycotina
+							Schizosaccharomycetes
+							Pneumocystidiomycetes
+							Taphrinomycetes
+				Glomeromycota
+			Zygomycota
+				Endogonales
+				Mucorales
+			Blastocladiomycota
+			Chytridiomycota
+			Neocallimastigomycota
+			Microsporidia
+		Animalia
+			Porifera
+			Cnidaria
+			Tardigrada
+			Annelida
+			Mollusca
+				Bivalvia
+				Gastropoda
+				Cephalopoda
+			Arthropoda
+				Arachnida
+					Araneae
+					Opiliones
+					Scorpiones
+					Heterostigmata
+				Crustacea
+					Euphausiacea
+					Brachyura
+					Isopoda
+					Cirripedia
+				Insecta
+					Anisoptera
+					Mantodea
+					Cicadoidea
+					Siphonaptera
+					Cucujoidea
+					Phengodidae
+					Drosophilidae
+					Culicidae
+					Lepidoptera
+					Apini
+					Formicidae
+			Deuterostomia
+				Echinodermata
+					Crinoidea
+					Asteroidea
+					Echinoidea
+					Holothuroidea
+				Vertebrata
+					Chondrichthyes
+						Carcharodon carcharias
+						Rhinocodon typus
+						Batoidea
+						Pristidae
+					Actinopterygii
+						Clupeomorpha
+						Xiphias gladius
+						Siluriformes
+						Carassius auratus
+						Tetraodontidae
+						Molidae
+						Gymnotiformes
+						Lophiiformes
+						Exocoetidae
+						'mudskipper'
+						Hippocampus
+						Psudoliparis swirei
+					Sarcopterygii
+					Tetrapoda
+						Amphibia
+							Gymnophiona
+							Caudata
+								Salamandra
+								Cryptobranchidae
+								Ambystomatidae
+							Anura
+						Reptilia
+							Testudines
+							Plesiosauria
+							Chamaeleonidae
+							Serpentes
+							Crocodilia
+							Dinosauria
+								Triceratops
+								Sauropoda
+								Tyrannosauroidea
+								Aves
+									magpie
+									parrot
+									eagle
+									owl
+									swan
+									chicken
+									penguin
+									hummingbird
+						Synapsida
+							monotreme
+							marsupial
+								kangaroo
+								possum
+								wombat
+							rodent
+								mouse
+								beaver
+							rabbit
+							feline
+							canine
+							bear
+							walrus
+							Artiodactyla
+								pig
+								camel
+								deer
+								giraffe
+							horse
+							elephant
+							cetacean
+							armadillo
+							bat
+							monkey
+							gorilla
+							chimpanzee
+							homo sapien
-- 
cgit v1.2.3